scripts.data.preprocessing.parseTERM.contact_idx

scripts.data.preprocessing.parseTERM.contact_idx(focus)

Assign an index per TERM residue based on how close you are to the central element used to create the TERM.

We set 0 to the central element, increment as you go N->C, decrement as you go C->N. Central element is middle residue for a first order TERM, central contact for second order TERM

Parameters:

focus (list of int) – List of ints representing global indices (e.g. within the protein) for residues in a TERM.

Returns:

Context indices derived from the focus

Return type:

list of int